miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159604148|gb|EY135844.1|EY135844 TTTTTTTTTTTTTTTTTTTGGAGGGTAATTTGGGGAGAATGGGGATTATTGTGTTTTTGATACCTTTATATTGTAATATG
GCGGTGGCGGTTTTGTTGTCGACGGTGATTGGGGCGTCCATGAAAGGTGAGACGGCCATGAAGTAGCGATTGGGGAGTTG
GTTTGCTCGGACGAGGACGTTTGTTGTTTGTCCGGGGGCTATTAGGATAGCGTTGGTTGAGAAGGGCTTTGTGTAGACGG
CGTCGATTTCGACGACGGTTAGAGTGTGGTTGGCTATGGCGAAGAAGAGCTCGTCGTTGAGTGCGGCGTTGATGATTCTT
AGTAGGTATGTTTTGCCTTGTTCAACTTCAATGGTATATGTGTATTTCTCGGAACACGGGAAGAGTGGGCCCGGCTTGCC
ATTGATCGTATGTGCATCCGACACATTCGGCGGCAATCCCAATTTGTTTCCTTGTTTAACAATCTCTTCAACATCATTGT
TCCACCATTCCCCTAACACTAAAGTTTGCTCCAAATCAGGCTGAGGAAAAGGATATGGAGTCCCAATTTTAGGCATTATT
ACAATAGCACCATAAACAGTAGCTCTTAGCCAAAGGATATGTGCATGCCACCATAATGTTCCTCTTTGCTCTGTTACATT
AAAATCATAAATGTAACTTTGGCCTGTCTGAATAGGACACTGTGTTATATATGCTGGCCCGTCTGCCCACCCGTTTCGA




Most similar to sp|Q8VZA1|LAC11_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8VZA1|LAC11_ARATH Laccase-11 OS=Arabidopsis thaliana GN=LAC11
           PE=2 SV=1
          Length = 557

 Score =  387 bits (994), Expect = e-107
 Identities = 178/223 (79%), Positives = 195/223 (87%)
 Frame = -2

Query: 718 RNGWADGPAYITQCPIQTGQSYIYDFNVTEQRGTLWWHAHILWLRATVYGAIVIMPKIGT 539
           RNGWADGPAYITQCPIQTGQSY+YDFNVT QRGTLWWHAHILWLRATVYGAIVI+P  G 
Sbjct: 89  RNGWADGPAYITQCPIQTGQSYLYDFNVTGQRGTLWWHAHILWLRATVYGAIVILPAPGK 148

Query: 538 PYPFPQPDLEQTLVLGEWWNNDVEEIVKQGNKLGLPPNVSDAHTINGKPGPLFPCSEKYT 359
           PYPFPQP  E  ++LGEWWN DVE  V Q N+LG PP +SDAHTINGKPGPLFPCSEK+T
Sbjct: 149 PYPFPQPYQESNIILGEWWNKDVETAVNQANQLGAPPPMSDAHTINGKPGPLFPCSEKHT 208

Query: 358 YTIEVEQGKTYLLRIINAALNDELFFAIANHTLTVVEIDAVYTKPFSTNAILIAPGQTTN 179
           + IE E GKTYLLRIINAALNDELFF IA H +TVVEIDAVYTKPF+T AIL+ PGQTTN
Sbjct: 209 FVIEAEAGKTYLLRIINAALNDELFFGIAGHNMTVVEIDAVYTKPFTTKAILLGPGQTTN 268

Query: 178 VLVRANQLPNRYFMAVSPFMDAPITVDNKTATAILQYKGIKNT 50
           VLV+ ++ PNRYFMA SPFMDAP++VDNKT TAILQYKG+ NT
Sbjct: 269 VLVKTDRSPNRYFMAASPFMDAPVSVDNKTVTAILQYKGVPNT 311